Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| UCEC | rs11070375 | chr15:42870587 | A/G | 8.0E-5 | 173 | 22.2 | 25.55 | 22.43 | KM Plot |
| UCEC | rs11107251 | chr12:94293988 | C/T | 3.3E-7 | 173 | 22.57 | 25.07 | 5.45 | KM Plot |
| UCEC | rs111247690 | chr9:834562 | A/G | 1.05E-8 | 170 | 22.67 | 19.1 | 4.5 | KM Plot |
| UCEC | rs111275502 | chr7:20679657 | T/C | 9.52E-12 | 174 | 22.67 | 19.17 | 4.33 | KM Plot |
| UCEC | rs111343887 | chr7:20676281 | A/C | 1.12E-11 | 173 | 22.63 | 19.17 | 4.33 | KM Plot |
| UCEC | rs111382660 | chr8:95488399 | GA/G | 1.65E-8 | 173 | 23.18 | 20.7 | 11.37 | KM Plot |
| UCEC | rs111461043 | chr14:73560505 | G/A | 4.68E-7 | 173 | 22.57 | 22.63 | 10.33 | KM Plot |
| UCEC | rs111485571 | chr14:105072534 | G/A | 0 | 167 | 22.57 | 22.78 | 1.67 | KM Plot |
| UCEC | rs111529921 | chr6:170738562 | TA/T | 6.76E-5 | 168 | 21.6 | 24.68 | 13.63 | KM Plot |
| UCEC | rs111558273 | chr14:73560254 | G/A | 4.68E-7 | 173 | 22.57 | 22.63 | 10.33 | KM Plot |
| UCEC | rs11159112 | chr14:75396185 | C/A | 7.02E-5 | 166 | 22.7 | 19.57 | 1.67 | KM Plot |
| UCEC | rs11175892 | chr12:66128057 | G/T | 3.85E-7 | 174 | 22.57 | 22.8 | 10.33 | KM Plot |
| UCEC | rs111784835 | chr7:20644787 | A/T | 0 | 172 | 22.7 | 20.13 | 4.33 | KM Plot |
| UCEC | rs111872870 | chr7:20663069 | C/T | 0 | 173 | 22.67 | 20.13 | 4.33 | KM Plot |
| UCEC | rs111966640 | chr19:324024 | G/A | 8.24E-7 | 166 | 24.35 | 20.08 | 7.13 | KM Plot |